Package mgui.neuro.components

Class AbstractNeuron

java.lang.Object

mgui.interfaces.AbstractInterfaceObject

mgui.models.networks.components.AbstractNetworkComponent

mgui.neuro.components.AbstractNeuroComponent

mgui.neuro.components.AbstractNeuron

All Implemented Interfaces:

java.lang.Cloneable, java.lang.Comparable<DynamicModelComponent>, AttributeListener, AttributeObject, InterfaceObject, NamedObject, TreeObject, CleanableObject, DynamicModelComponent, TimeStepListener, Updateable, Neuron

Direct Known Subclasses:

ConnectableNeuron

public abstract class AbstractNeuron
extends AbstractNeuroComponent
implements Neuron

Field Summary

Fields

Modifier and Type	Field	Description
AbstractAxon	axon
AbstractDendrites	dendrites
AbstractSoma	soma

Fields inherited from class mgui.neuro.components.AbstractNeuroComponent

attributes, clock, connections, events, hasSubComponents, id, listeners, solver, updated

Fields inherited from class mgui.interfaces.AbstractInterfaceObject

isDestroyed, tree_nodes

Constructor Summary

Constructors

Constructor	Description
AbstractNeuron()

Method Summary

Modifier and Type	Method	Description
void	connectDendrites()	Resets the dendrite connectivity for this neuron by connecting all dendrites which are not connected to other dendrites to this neuron's soma.
Axon	getAxon()
static AbstractNeuron	getBasicUnit()
Dendrites	getDendrites()
AbstractSoma	getSoma()
java.util.ArrayList<DynamicModelComponent>	getSubComponents()	Returns a list of the complete subcomponent tree.
protected void	init()
void	setAxon(Axon a)
void	setDendrites(Dendrites d)
void	setSoma(Soma s)
void	setTreeNode(InterfaceTreeNode treeNode)	Sets the children for this node's InterfaceTreeNode.
java.lang.String	toString()

Methods inherited from class mgui.neuro.components.AbstractNeuroComponent

addConnection, addEvent, addListener, addToEngine, attributeUpdated, clone, compareTo, executeEvent, executeEvents, fireListeners, fireListeners, getAttribute, getAttributes, getConnections, getDelay, getID, getName, getODESolver, getRate, getSolver, hasSubComponents, removeConnection, removeListener, reset, resetClock, setAttribute, setAttributes, setDelay, setID, setID, setName, setODESolver, setSolver, setSolver, timeElapsed, updateComponent, updateFromClock

Methods inherited from class mgui.models.networks.components.AbstractNetworkComponent

getAttributeValue

Methods inherited from class mgui.interfaces.AbstractInterfaceObject

clean, destroy, getTreeLabel, isDestroyed, issueTreeNode, updateTreeNodes

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface mgui.interfaces.util.CleanableObject

clean

Methods inherited from interface java.lang.Comparable

compareTo

Methods inherited from interface mgui.models.dynamic.DynamicModelComponent

addConnection, addEvent, addToEngine, clone, executeEvents, getID, hasSubComponents, removeConnection, reset, setID, setID

Methods inherited from interface mgui.interfaces.InterfaceObject

destroy, isDestroyed

Methods inherited from interface mgui.interfaces.NamedObject

getName, setName

Methods inherited from interface mgui.models.dynamic.TimeStepListener

timeElapsed

Methods inherited from interface mgui.interfaces.trees.TreeObject

getTreeLabel, issueTreeNode

Field Details

axon

public AbstractAxon axon

soma

public AbstractSoma soma

dendrites

public AbstractDendrites dendrites

Constructor Details

AbstractNeuron

public AbstractNeuron()

Method Details

init

protected void init()

Overrides:

init in class AbstractNeuroComponent

getSoma

public AbstractSoma getSoma()

Specified by:

getSoma in interface Neuron

setSoma

public void setSoma(Soma s)
             throws NeuroException

Specified by:

setSoma in interface Neuron

Throws:

NeuroException

getDendrites

public Dendrites getDendrites()

Specified by:

getDendrites in interface Neuron

setDendrites

public void setDendrites(Dendrites d)
                  throws NeuroException

Specified by:

setDendrites in interface Neuron

Throws:

NeuroException

getAxon

public Axon getAxon()

Specified by:

getAxon in interface Neuron

getBasicUnit

public static AbstractNeuron getBasicUnit()

setAxon

public void setAxon(Axon a)
             throws NeuroException

Specified by:

setAxon in interface Neuron

Throws:

NeuroException

connectDendrites

public void connectDendrites()

Resets the dendrite connectivity for this neuron by connecting all dendrites which are not connected to other dendrites to this neuron's soma. If soma or dendrites are null this does nothing, obviously :P

Specified by:

connectDendrites in interface Neuron

setTreeNode

public void setTreeNode(InterfaceTreeNode treeNode)

Description copied from interface: TreeObject

Sets the children for this node's InterfaceTreeNode.

Specified by:

setTreeNode in interface TreeObject

Overrides:

setTreeNode in class AbstractInterfaceObject

getSubComponents

public java.util.ArrayList<DynamicModelComponent> getSubComponents()

Description copied from class: AbstractNeuroComponent

Returns a list of the complete subcomponent tree. Subclasses containing subcomponents should override this and provide an enumeration of all subcomponents, also calling this method for each subcomponent to ensure a complete tree is returned.

Specified by:

getSubComponents in interface DynamicModelComponent

Overrides:

getSubComponents in class AbstractNeuroComponent

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object